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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0254Hypothetical protein; Identified by Glimmer2; putative. (722 aa)    
Predicted Functional Partners:
VC_2640
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.819
VC_A0257
Sensor histidine kinase; Similar to PID:1001492 PID:1001594; identified by sequence similarity; putative.
 
   
 0.649
VC_0769
Chitinase, putative; Similar to SP:P08252 PID:19861 PID:19863 PID:512387; identified by sequence similarity; putative.
  
     0.636
VC_A0255
Hypothetical protein; Identified by Glimmer2; putative.
       0.597
VC_2622
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.595
VC_0622
Sensory box sensor histidine kinase/response regulator; Similar to PID:939724; identified by sequence similarity; putative.
  
   
 0.587
VC_A0256
Transcriptional regulator; Similar to GB:M31794 SP:P45605 PID:149295; identified by sequence similarity; putative.
       0.569
VC_0180
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.567
VC_A0284
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.543
VC_A0258
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.518
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.