Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_A0260Hypothetical protein; Identified by Glimmer2; putative. (64 aa)    
Predicted Functional Partners:
VC_A0261
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.993
VC_A0259
Hypothetical protein; Identified by Glimmer2; putative.
       0.705
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
   
 0.704
cueR
Transcriptional regulator, MerR family; Regulates the transcription of the copA and cueO genes. It detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations (By similarity).
   
  
 0.647
VC_A0262
Hypothetical protein; Identified by Glimmer2; putative.
       0.596
VC_A0258
Hypothetical protein; Identified by Glimmer2; putative.
       0.586
VC_2216
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.537
VC_1267
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.530
VC_A0264
Transcriptional regulator, putative; Similar to PID:1651704; identified by sequence similarity; putative.
  
  
 0.530
VC_0194
Gamma-glutamyltranspeptidase; Similar to GB:AL123456; identified by sequence similarity; putative.
 
    0.494
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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