STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0281Integrase, putative; Similar to GP:3294478; identified by sequence similarity; putative; Belongs to the 'phage' integrase family. (385 aa)    
Predicted Functional Partners:
VC_A0282
IS5 transposase; Similar to GB:J01735; identified by sequence similarity; putative.
     
 0.803
VC_1809
Transcriptional regulator, putative; Similar to SP:P12552 PID:15163 PID:15171; identified by sequence similarity; putative.
 
  
 0.757
VC_1785
Transcriptional regulator; Similar to PID:1196729; identified by sequence similarity; putative.
 
  
 0.756
VC_0497
Transcriptional regulator; Similar to SP:P12552 PID:15163 PID:15171; identified by sequence similarity; putative.
 
  
 0.752
VC_1289
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
      
 0.579
VC_1409
Multidrug resistance protein, putative; Similar to GP:3378279; identified by sequence similarity; putative.
  
     0.416
VC_A0284
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.405
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.