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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0300Chloramphenicol acetyltransferase; Similar to SP:P26838 GB:M80188 PID:150399; identified by sequence similarity; putative. (209 aa)    
Predicted Functional Partners:
VC_A0836
Hexapeptide-repeat containing-acetyltransferase; Similar to GB:D26185 SP:P37515 GB:L16865 PID:438465 PID:467369; identified by sequence similarity; putative.
 
   
 0.836
VC_0238
Transferase, hexapeptide repeat family; Similar to GB:L77117 PID:1591716; identified by sequence similarity; putative.
 
     0.773
VC_0934
Capsular polysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:U00096 SP:P71241 PID:1407618 PID:1736749 PID:1736753; identified by sequence similarity; putative.
  
  
 0.689
VC_0244
Perosamine synthase; Similar to GB:X59554 PID:48386; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.667
VC_0919
Serine acetyltransferase-related protein; Similar to GB: GB: GB: PID:1107505 PID:1184048; identified by sequence similarity; putative.
 
 
 0.522
VC_0937
Exopolysaccharide biosynthesis protein, putative; Similar to GP:3493609; identified by sequence similarity; putative.
  
  
 0.503
VC_A0301
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to PID:887852 GB:U00096 PID:1773222 PID:2160242 PID:2367175; identified by sequence similarity; putative.
     
 0.490
VC_A0299
Hypothetical protein; Identified by Glimmer2; putative.
       0.475
VC_0923
Serine acetyltransferase-related protein; Similar to GB:AE000511 SP:P71405 PID:1518452 PID:2314370; identified by sequence similarity; putative.
 
 
 0.451
VC_0537
Cysteine synthase B; Similar to SP:P29848 GB:X52093 GB:X59595 PID:581757; identified by sequence similarity; putative; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.444
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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