STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0436Acetyltransferase, putative; Similar to GB:AL009126; identified by sequence similarity; putative. (171 aa)    
Predicted Functional Partners:
VC_A0439
Microcin immunity protein MccF; Similar to GP:2565352; identified by sequence similarity; putative.
 
     0.659
VC_A0337
Microcin immunity protein MccF; Similar to GP:2565352; identified by sequence similarity; putative; Belongs to the peptidase S66 family.
 
     0.552
speG
Spermidine n1-acetyltransferase; Involved in the protection against polyamine toxicity by regulating their concentration. Catalyzes the transfer of an acetyl group from acetyl coenzyme A (AcCoA) to the primary amino groups of spermidine to yield N(1)- and N(8)-acetylspermidine. It can use polyamines such as spermine and N(1)-acetylspermine, but not putrescine or cadaverine; Belongs to the acetyltransferase family.
 
   
 0.535
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.457
VC_A0435
Hypothetical protein; Identified by Glimmer2; putative.
       0.447
VC_1889
Ribosomal-protein-serine acetyltransferase, putative; Similar to SP:P13857 GB:X15860 PID:42749 GB:U00096 PID:1742324; identified by sequence similarity; putative.
  
   
 0.428
VC_A0631
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.417
VC_A0437
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
VC_A0438
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.