STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0439Microcin immunity protein MccF; Similar to GP:2565352; identified by sequence similarity; putative. (334 aa)    
Predicted Functional Partners:
VC_A0436
Acetyltransferase, putative; Similar to GB:AL009126; identified by sequence similarity; putative.
 
     0.659
VC_A0505
Acetyltransferase, putative; Similar to SP:P05332 GB:X07542 PID:39573; identified by sequence similarity; putative.
 
     0.553
VC_0239
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.498
VC_A0440
Hypothetical protein; Identified by Glimmer2; putative.
       0.473
VC_2662
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.461
VC_A0437
Hypothetical protein; Identified by Glimmer2; putative.
       0.450
VC_A0438
Hypothetical protein; Identified by Glimmer2; putative.
       0.450
VC_0550
Oxaloacetate decarboxylase, alpha subunit; Similar to GB:J03885 SP:P13187 PID:149289; identified by sequence similarity; putative.
   
    0.416
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.