Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0444relE protein; Similar to SP:P07008 GB:X02405 PID:42701 GB:U00096 PID:1787846; identified by sequence similarity; putative. (96 aa)    
Predicted Functional Partners:
VC_A0445
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.973
VC_A0477
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.887
VC_A0324
DNA-damage-inducible protein J; Similar to PID:984582 GB:U00096 SP:Q47150 PID:1786420; identified by sequence similarity; putative.
  
 
 0.811
VC_A0422
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.576
VC_A0312
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.567
VC_A0386
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.567
VC_A0488
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.510
parE
Topoisomerase IV, subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
      
 0.464
VC_A0446
Haemagglutinin; Similar to GB:X64097 PID:396848 PID:48356; identified by sequence similarity; putative.
       0.440
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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