Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
VC_A0470Acetyltransferase, putative; Similar to GB:U00096 PID:1788774; identified by sequence similarity; putative. (144 aa)    
Predicted Functional Partners:
VC_A0319
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_A0482
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_A0486
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_2146
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.599
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
    
   0.515
higB-2
Hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. Inhibits translation by cleavage of mRNA.
       0.486
higA-2
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system that counteracts the effect of the HigB-2 toxin. Binds to its own promoter and regulates transcription of the higB-2/higA-2 operon.
       0.486
VC_A0471
Hypothetical protein; Identified by Glimmer2; putative.
       0.463
VC_1083
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.460
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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