Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
VC_A0477Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (90 aa)    
Predicted Functional Partners:
VC_A0478
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.973
VC_A0444
relE protein; Similar to SP:P07008 GB:X02405 PID:42701 GB:U00096 PID:1787846; identified by sequence similarity; putative.
 
 
 
 0.887
VC_A0359
Plasmid stabilization element ParE, putative; Similar to GB:AL123456; identified by sequence similarity; putative; Belongs to the RelE toxin family.
 
   
 0.621
higB-2
Hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. Inhibits translation by cleavage of mRNA.
   
 
 0.510
VC_A0479
Acetyltransferase, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
       0.495
VC_A0476
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.448
VC_A0489
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.447
VC_A0349
relB protein; Similar to SP:P07007 GB:X02405 PID:42700 GB:U00096 PID:1742559; identified by sequence similarity; putative.
      
 0.442
higA-1
Antidote protein, putative; Antitoxin component of a type II toxin-antitoxin (TA) system that counteracts the effect of the HigB-1 toxin. Binds to its own promoter and regulates transcription of the higB-1/higA-1 operon.
     
 0.408
VC_A0486
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.406
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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