STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0486Hypothetical protein; Identified by Glimmer2; putative. (141 aa)    
Predicted Functional Partners:
VC_A0487
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.919
VC_A0488
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
     
 0.675
VC_0657
Ribosomal-protein-alanine acetyltransferase; Similar to GB:L42023 SP:P44305 PID:1004120 PID:1221913 PID:1204268; identified by sequence similarity; putative.
   
   0.622
VC_1341
Acetyltransferase, putative; Similar to PID:1550710 GB:AL123456; identified by sequence similarity; putative.
   
   0.622
VC_2332
Acetyltransferase, GNAT family; Similar to GB:Pyro_h; identified by sequence similarity; putative.
   
   0.622
VC_A0382
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.622
VC_A0400
Acetyltransferase, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
   
   0.622
VC_A0402
Acetyltransferase, putative; Similar to PID:1222692; identified by sequence similarity; putative.
   
   0.622
VC_A0470
Acetyltransferase, putative; Similar to GB:U00096 PID:1788774; identified by sequence similarity; putative.
   
   0.622
VC_A0479
Acetyltransferase, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
   
   0.622
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.