STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0488Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (85 aa)    
Predicted Functional Partners:
VC_A0489
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.949
VC_A0423
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.785
higB-2
Hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. Inhibits translation by cleavage of mRNA.
 
 
 
 0.745
VC_A0444
relE protein; Similar to SP:P07008 GB:X02405 PID:42701 GB:U00096 PID:1787846; identified by sequence similarity; putative.
   
 
 0.680
VC_A0478
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.680
VC_A0486
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.645
VC_A0487
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.528
VC_A0490
Lipase, GDXG family; Similar to GB:AE000782; identified by sequence similarity; putative.
       0.486
VC_0811
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.453
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.