Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0514Hypothetical protein; Identified by Glimmer2; putative. (227 aa)    
Predicted Functional Partners:
rimK
Ribosomal protein S6 modification protein; Similar to SP:P17116 GB:X15859 PID:42747 GB:U00096 PID:1651386; identified by sequence similarity; putative.
 
   
 0.779
VC_A0511
Anaerobic ribonucleoside-triphosphate reductase; Similar to SP:P28903 GB:L06097 GB:U06195 GB:Z46865 PID:146970; identified by sequence similarity; putative.
       0.694
nrdG
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
       0.694
VC_A0513
Amino acid biosynthesis aminotransferase; Similar to PID:1806263; identified by sequence similarity; putative.
       0.692
VC_2282
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.680
VC_1161
Gonadoliberin III-related protein; Similar to SP:P51923 PID:987488; identified by sequence similarity; putative.
 
     0.662
VC_1160
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.649
VC_0573
Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
      
 0.563
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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