Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0543Conserved hypothetical protein; Identified by Glimmer2; putative. (170 aa)    
Predicted Functional Partners:
dcuC
C4-dicarboxylate transporter, anaerobic; Responsible for the transport of C4-dicarboxylates during anaerobic growth; Belongs to the DcuC/DcuD transporter (TC 2.A.61) family.
  
     0.755
VC_0872
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0253 family.
  
     0.754
VC_1576
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0267 family.
  
     0.737
VC_1871
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0304 family.
  
     0.713
VC_A0542
Transcriptional regulator, LysR family; Similar to SP:P32484 PID:405876 PID:466777 GB:U00096 PID:1788481; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.713
VC_0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.712
VC_0144
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.666
menC
o-succinylbenzoate-CoA synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.666
VC_A0540
Formate transporter 1, putative; Similar to SP:P21501 PID:147154 GB:U00096 PID:1651428 PID:1651435; identified by sequence similarity; putative.
  
    0.647
alaE
Conserved hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.617
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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