Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0550Hypothetical protein; Identified by Glimmer2; putative. (360 aa)    
Predicted Functional Partners:
VC_0600
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.598
VC_A0549
phnA protein; Similar to SP:P16680 GB:U14003 PID:147194 PID:536952 GB:U00096; identified by sequence similarity; putative.
       0.549
VC_A0634
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.530
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase, putative; Similar to GB:L42023 SP:P43851 PID:1008795 PID:1205955 PID:1221880; identified by sequence similarity; putative; Belongs to the SAICAR synthetase family.
  
     0.492
VC_A0517
1-phosphofructokinase; Similar to SP:P23539 GB:X53948 PID:405894 PID:41487 GB:U00096; identified by sequence similarity; putative; Belongs to the carbohydrate kinase PfkB family.
  
    0.477
VC_2676
Cell division protein FtsN, putative; Similar to GB:L19201 SP:P29131 GB:L14281 PID:290448 PID:305036; identified by sequence similarity; putative.
 
  
 0.440
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
    0.415
VC_0605
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0231 family.
  
     0.414
VC_A1012
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.414
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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