Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_A0559Hypothetical protein; Identified by Glimmer2; putative. (327 aa)    
Predicted Functional Partners:
VC_0414
Hypothetical protein; Identified by Glimmer2; putative.
    
 
 0.738
VC_1544
tonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.674
tonB
tonB1 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity).
   
 
 0.674
VC_A0558
Similar to GB:AL009126; identified by sequence similarity; putative.
       0.569
VC_1091
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Similar to SP:P06202 GB:X05491 GB:X52093 PID:47802 PID:47808; identified by sequence similarity; putative.
   
   0.513
VC_A0591
Peptide ABC transporter, periplasmic peptide-binding protein, putative; Similar to SP:P33913 GB:U00008 PID:453986 GB:U00096 PID:1788503; identified by sequence similarity; putative.
   
   0.513
tagA
ToxR-activated gene A protein; Similar to GP:3004926; identified by sequence similarity; putative.
   
   0.486
VC_A0148
TagA-related protein; Similar to GB:U12265 SP:P24019 PID:516033; identified by sequence similarity; putative.
   
   0.486
VC_2061
ParA family protein; Similar to GP:3721574; identified by sequence similarity; putative.
    
   0.483
VC_2773
ParA family protein; Similar to SP:P31856 PID:45713; identified by sequence similarity; putative.
    
   0.483
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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