STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0567Hypothetical protein; Identified by Glimmer2; putative. (296 aa)    
Predicted Functional Partners:
VC_A0565
Sensor histidine kinase; Similar to GB:AE000511 PID:2313251; identified by sequence similarity; putative.
     
 0.850
VC_A0566
Transcriptional regulator; Similar to SP:Q11156 PID:1449289 PID:2190480 GB:AL123456; identified by sequence similarity; putative.
     
 0.814
VC_A0568
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.690
VC_A0564
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.580
VC_A0563
NAD(P) transhydrogenase, alpha subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.
       0.569
VC_A0569
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0181 family.
       0.554
VC_A0256
Transcriptional regulator; Similar to GB:M31794 SP:P45605 PID:149295; identified by sequence similarity; putative.
     
 0.412
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.