STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0571Hypothetical protein; Identified by Glimmer2; putative. (127 aa)    
Predicted Functional Partners:
VC_A0570
Sui1 family protein; Similar to GB:L42023 SP:P45116 PID:1007124 PID:1221351 PID:1205466; identified by sequence similarity; putative.
       0.849
VC_A0551
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.488
VC_0957
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.475
VC_A1092
Methyl-accepting chemotaxis protein; Similar to SP:P02942 GB:J01718 GB:V00373 PID:148077 PID:537197; identified by sequence similarity; putative.
      
 0.475
ddl
D-alanine--D-alanine ligase; Cell wall formation.
       0.461
VC_A1096
Chemotaxis protein CheY; Similar to GB:U13166 PID:534836; identified by sequence similarity; putative.
      
 0.450
VC_1080
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.425
VC_A1080
Secretion protein, HlyD family; Similar to GP:1314576; identified by sequence similarity; putative.
      
 0.425
VC_A1086
Response regulator; Similar to PID:1653310; identified by sequence similarity; putative.
      
 0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.