STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0578Conserved hypothetical protein; Identified by Glimmer2; putative. (565 aa)    
Predicted Functional Partners:
VC_A0579
Hypothetical protein; Identified by Glimmer2; putative.
       0.608
VC_A0580
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the thioesterase PaaI family.
       0.608
VC_A1047
Mannitol operon repressor; Similar to SP:P36563 PID:434583 PID:466739 GB:U00096 PID:1790029; identified by sequence similarity; putative.
  
     0.574
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.572
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.563
VC_0144
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.561
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.549
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.548
VC_A1098
ABC transporter, periplasmic substrate-binding protein; Similar to SP:P33590 GB:X73143 PID:404845 PID:466612 GB:U00096; identified by sequence similarity; putative.
  
  
 0.546
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.527
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.