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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0581Conserved hypothetical protein; Identified by Glimmer2; putative. (263 aa)    
Predicted Functional Partners:
VC_0335
NlpD-related protein; Similar to SP:P37690 PID:466751 GB:U00096 PID:1790042; identified by sequence similarity; putative.
 
 
 
 0.827
VC_1751
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.815
VC_0490
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.801
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.795
VC_2750
GGDEF family protein; Similar to PID:1653584; identified by sequence similarity; putative.
    
 0.762
VC_0449
Methyl-accepting chemotaxis protein; Similar to GB:X61367 PID:48195; identified by sequence similarity; putative.
    
  0.748
VC_A0008
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
    
  0.748
VC_1367
GGDEF family protein; Similar to PID:633121; identified by sequence similarity; putative.
    
 0.660
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
    0.620
VC_A0579
Hypothetical protein; Identified by Glimmer2; putative.
       0.616
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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