Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0592MutT/nudix family protein; Similar to SP:P46351; identified by sequence similarity; putative. (186 aa)    
Predicted Functional Partners:
VC_A0589
Peptide ABC transporter, permease protein, putative; Similar to SP:P33915 GB:U00008 PID:405908 GB:U00096 PID:1736844; identified by sequence similarity; putative.
       0.704
VC_A0590
Peptide ABC transporter, permease protein, putative; Similar to SP:P33914 GB:U00008 PID:405905 GB:U00096 PID:1736843; identified by sequence similarity; putative.
       0.704
VC_A0591
Peptide ABC transporter, periplasmic peptide-binding protein, putative; Similar to SP:P33913 GB:U00008 PID:453986 GB:U00096 PID:1788503; identified by sequence similarity; putative.
       0.704
VC_A0593
Hypothetical protein; Identified by Glimmer2; putative.
       0.676
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.645
VC_1505
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.640
VC_1616
Glutaredoxin, putative; Similar to GB:M60116 SP:P23171 PID:144907; identified by sequence similarity; putative.
  
     0.608
VC_A0588
Peptide ABC transporter, ATP-binding protein, putative; Similar to SP:P33916 PID:405909 GB:U00096 PID:1736845 PID:1788506; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
    0.530
VC_A1008
Outer membrane protein, putative; Similar to PID:1658032; identified by sequence similarity; putative.
  
     0.526
VC_A0779
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.516
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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