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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0633glpM protein; Similar to GB:L06231 PID:1066871 SP:P52112; identified by sequence similarity; putative. (116 aa)    
Predicted Functional Partners:
VC_A0632
MutT/nudix family protein; Similar to GB:U00096 PID:1742868 PID:1788056; identified by sequence similarity; putative; Belongs to the Nudix hydrolase family.
       0.669
VC_A0631
Hypothetical protein; Identified by Glimmer2; putative.
       0.569
VC_A0630
D-3-phosphoglycerate dehydrogenase-related protein; Similar to GB:Pyro_h; identified by sequence similarity; putative; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.545
VC_A0629
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.538
VC_A0634
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.518
VC_A0635
Transcriptional regulator, LysR family; Similar to GB:U00096 PID:1788100; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.507
acfD
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.495
alaE
Conserved hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.412
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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