Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0634Conserved hypothetical protein; Identified by Glimmer2; putative. (241 aa)    
Predicted Functional Partners:
VC_A0635
Transcriptional regulator, LysR family; Similar to GB:U00096 PID:1788100; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
 
     0.820
VC_0605
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0231 family.
  
     0.654
VC_1310
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.654
VC_2093
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.644
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
    0.564
VC_A0026
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0319 family.
  
     0.535
VC_A0550
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.530
VC_A0633
glpM protein; Similar to GB:L06231 PID:1066871 SP:P52112; identified by sequence similarity; putative.
       0.525
VC_1853
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0319 family.
  
     0.518
VC_2757
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.482
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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