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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0644NADH oxidase, putative; Similar to GB:AE000782; identified by sequence similarity; putative. (567 aa)    
Predicted Functional Partners:
hisI
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase; Similar to SP:P06989 GB:D43637 GB:U02072 GB:X03974 PID:41700; identified by sequence similarity; putative; In the C-terminal section; belongs to the PRA-PH family.
  
  
 0.965
mnmC
Conserved hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.
   
 0.946
dadA
D-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids.
   
 0.944
VC_A0779
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.944
VC_A0924
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.937
VC_2270
Riboflavin synthase, alpha subunit; Similar to GB:L11391 PID:496180 SP:P51961; identified by sequence similarity; putative.
  
    0.927
VC_A0246
SgaT protein; Similar to GB:U14003 SP:P39301 PID:537034 GB:U00096 PID:2367358; identified by sequence similarity; putative.
   
    0.927
VC_1270
Glyoxylase II family protein; Similar to GB:U00096 SP:P75849 PID:1787158; identified by sequence similarity; putative.
  
 0.925
VC_1562
Beta-lactamase-related protein; Similar to GB:M19530 SP:P04190 SP:P14488 PID:143128; identified by sequence similarity; putative.
  
 0.925
gloB
Hydroxyacylglutathione hydrolase GloB, putative; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
 0.925
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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