STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0653PTS system, sucrose-specific IIBC component; Similar to GB:M76768 SP:P22825 PID:155262; identified by sequence similarity; putative. (479 aa)    
Predicted Functional Partners:
VC_0964
PTS system, glucose-specific IIA component; Similar to GB:J02796 SP:P08837 GB:M93578 GB:M93579 GB:M93580; identified by sequence similarity; putative.
 0.999
VC_A0655
Sucrose-6-phosphate dehydrogenase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.989
VC_0270
ROK family protein; Similar to SP:P23917 GB:X76979 PID:145329 PID:581151 GB:U00096; identified by sequence similarity; putative.
  
 0.963
VC_0993
N-acetylglucosamine repressor; Similar to GP:2541902; identified by sequence similarity; putative.
  
 0.963
nagK
ROK family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
  
 0.963
nanK
ROK family protein; Catalyzes the phosphorylation of N-acetylmannosamine (ManNAc) to ManNAc-6-P; Belongs to the ROK (NagC/XylR) family. NanK subfamily.
  
 0.963
VC_2007
Transcriptional regulator, ROK family; Similar to PID:971264 SP:P50456 GB:U00096 PID:1549225 PID:1742617; identified by sequence similarity; putative.
  
 0.963
VC_0613
beta-N-acetylhexosaminidase; Similar to PID:1698442; identified by sequence similarity; putative.
  
  
 0.962
VC_2217
beta-N-acetylhexosaminidase; Similar to PID:1698442; identified by sequence similarity; putative.
  
  
 0.962
VC_0911
Trehalose-6-phosphate hydrolase; Similar to SP:P39795 PID:580942 PID:1000452 GB:AL009126; identified by sequence similarity; putative.
 
 
 0.956
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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