STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0657Aerobic glycerol-3-phosphate dehydrogenase; Similar to SP:P13035 GB:M21277 GB:M55989 GB:M96795 PID:146181; identified by sequence similarity; putative; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (512 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
 0.992
VC_1198
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.916
VC_A0985
Oxidoreductase/iron-sulfur cluster-binding protein; Similar to GB:AE000511 PID:2314381; identified by sequence similarity; putative.
  
 
 0.904
glpB
Anaerobic glycerol-3-phosphate dehydrogenase, subunit B; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor.
 
 0.855
gpsA
Glycerol-3-phosphate dehydrogenase (NAD+); Similar to SP:P37606 PID:466746 GB:U00096 PID:1657692 PID:1790037; identified by sequence similarity; putative; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 0.761
VC_A0749
Anaerobic glycerol-3-phosphate dehydrogenase, subunit C; Similar to GB:M20938 SP:P13034 PID:146179 GB:U00096 PID:1788576; identified by sequence similarity; putative.
 
 
 0.739
VC_A0940
Transcriptional regulator, DeoR family; Similar to SP:P09392 GB:M96795 PID:146186 PID:606358 GB:U00096; identified by sequence similarity; putative.
 
  
 0.689
VC_1553
Glycerol-3-phosphate regulon repressor; Similar to SP:P09392 GB:M96795 PID:146186 PID:606358 GB:U00096; identified by sequence similarity; putative.
 
  
 0.665
VC_1554
Glycerophosphoryl diester phosphodiesterase, putative; Similar to SP:P54527 PID:1303930 GB:AL009126; identified by sequence similarity; putative.
 
 
 0.619
citD
Citrate lyase, gamma subunit; Covalent carrier of the coenzyme of citrate lyase.
   
    0.616
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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