STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0683Sensor protein UhpB; Similar to GB:M89480 SP:P27668 PID:154409; identified by sequence similarity; putative. (527 aa)    
Predicted Functional Partners:
VC_A0682
Transcriptional regulator UhpA; Similar to GB:L10328 SP:P10940 GB:M89479 PID:148112 PID:148117; identified by sequence similarity; putative.
 
 
 0.970
VC_1277
Transcriptional regulator, LuxR family; Similar to GB:M21658 SP:P13800 GB:M23649 PID:143089 PID:143499; identified by sequence similarity; putative.
 
 
 0.874
VC_1213
Transcriptional regulator, LuxR family; Similar to GB:M24615 SP:P07027 GB:X03691 PID:43289 PID:551848; identified by sequence similarity; putative.
 
 
 0.867
VC_A0952
Transcriptional regulator, LuxR family; Similar to PID:1147562 SP:P52106 GB:U00096 PID:1787277; identified by sequence similarity; putative.
 
 
 0.857
VC_0396
Transcriptional regulator, LuxR family; Similar to PID:1147562 SP:P52106 GB:U00096 PID:1787277; identified by sequence similarity; putative.
 
 
 0.845
VC_2702
Transcriptional regulator, LuxR family; Similar to GB:M60805 SP:P29369 PID:151239; identified by sequence similarity; putative.
 
 
 0.841
VC_A0684
Regulatory protein UhpC; Similar to GB:L10328 SP:P09836 GB:M89479 PID:148114 PID:148119; identified by sequence similarity; putative.
  
 
 0.759
VC_0464
Transcriptional regulator, LuxR family; Similar to GB:X80506 SP:P45785 PID:516862; identified by sequence similarity; putative.
 
 
 0.606
VC_A0675
Nitrate/nitrite sensor protein NarQ; Similar to GB:M94724 SP:P27896 GB:X65714 PID:146928 PID:581139; identified by sequence similarity; putative.
  
  
0.565
VC_A0888
Transcriptional regulator, LuxR family; Similar to GB:M98835 SP:Q03316 PID:152430; identified by sequence similarity; putative.
 
 
 0.544
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.