STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0702Iron-containing alcohol dehydrogenase; Similar to PID:882540 GB:U00096 PID:1789386; identified by sequence similarity; putative. (382 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.925
VC_2033
Alcohol dehydrogenase/acetaldehyde dehydrogenase; Similar to GB:M33504 SP:P17547 GB:X59263 GB:X67326 PID:145206; identified by sequence similarity; putative; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
 
0.868
VC_0667
Oxidoreductase Tas, aldo/keto reductase family; Similar to PID:882727 GB:U00096 PID:1789199 PID:2342573; identified by sequence similarity; putative.
  
 
 0.700
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
 
 0.654
VC_2093
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
   0.650
VC_0250
Iron-containing alcohol dehydrogenase family protein RfbM; Similar to GB:M26941 SP:P13604 PID:144714; identified by sequence similarity; putative.
  
  
0.649
VC_1147
Iron-containing alcohol dehydrogenase; Similar to SP:P10127 PID:1150583 PID:1322937 PID:3337; identified by sequence similarity; putative.
  
  
0.647
VC_A1054
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.638
VC_A0043
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.616
arcA
Arginine deiminase; Similar to GB:X14694 SP:P13981 GB:S43866 PID:45286; identified by sequence similarity; putative.
   
    0.608
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.