Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0732Conserved hypothetical protein; Identified by Glimmer2; putative. (132 aa)    
Predicted Functional Partners:
VC_1637
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.960
VC_A0731
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.797
VC_A0734
Hypothetical protein; Identified by Glimmer2; putative.
       0.746
VC_1639
Sensor histidine kinase; Similar to PID:929823; identified by sequence similarity; putative.
 
  
 0.703
VC_A0733
Hypothetical protein; Identified by Glimmer2; putative.
       0.639
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.617
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
    0.581
VC_1638
DNA-binding response regulator; Similar to PID:929822; identified by sequence similarity; putative.
  
  
 0.576
VC_A0135
Cyclic nucleotide binding protein, putative; Similar to GB:AE000520; identified by sequence similarity; putative.
  
     0.567
gbpA
Chitinase, putative; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. This function enhances bacterial colonization in the gastrointestinal tract and may also be important in the environment by augment colonization of chitinous structures, leading to improved survival. Promotes bacterial attachment to, and colonization of, zooplankton in the aquatic ecosystem; Belongs to the GbpA family.
  
     0.557
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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