STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0754Lipase-related protein; Similar to SP:P19515 PID:488853; identified by sequence similarity; putative. (276 aa)    
Predicted Functional Partners:
VC_A0735
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.752
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.751
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.740
VC_A0561
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.733
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.723
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
  
     0.720
ompU
Outer membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane.
  
     0.714
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.709
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.686
VC_2691
Periplasmic protein cpxP, putative; Similar to SP:P32158; identified by sequence similarity; putative.
  
     0.673
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.