STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0763Conserved hypothetical protein; Identified by Glimmer2; putative. (552 aa)    
Predicted Functional Partners:
VC_A0762
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.966
VC_0281
Lysine decarboxylase, inducible; Similar to SP:P23892 GB:M67452 GB:M76411 PID:145454 PID:145458; identified by sequence similarity; putative.
    
 
 0.815
VC_A1063
Ornithine decarboxylase, inducible; Similar to GB:M64495 SP:P24169 PID:147331 GB:U00096 PID:1651300; identified by sequence similarity; putative.
    
 
 0.815
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.649
VC_A0172
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.632
VC_2473
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.618
VC_A0174
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.571
VC_2662
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.514
VC_1731
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.507
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.506
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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