STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0767Transcriptional regulator, TetR family; Similar to SP:P34000 GB:U00734 PID:532309 GB:U00096 PID:1773146; identified by sequence similarity; putative. (244 aa)    
Predicted Functional Partners:
VC_A0764
MutT/nudix family protein; Similar to SP:P54570 PID:1303984 GB:AL009126; identified by sequence similarity; putative.
       0.669
VC_A0765
L-allo-threonine aldolase; Similar to GB:U00096 SP:P75823 PID:1787095 PID:2225892; identified by sequence similarity; putative.
       0.586
VC_1408
Transcriptional regulator, TetR family; Similar to GB:M97208 SP:P32398 PID:143046 PID:2226233 GB:AL009126; identified by sequence similarity; putative.
      
 0.552
VC_A0766
Cytochrome c554; Similar to SP:P00105; identified by sequence similarity; putative.
       0.542
VC_A0792
Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative.
      
 0.542
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
  
 
 
 0.519
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.495
VC_A0754
Lipase-related protein; Similar to SP:P19515 PID:488853; identified by sequence similarity; putative.
  
     0.481
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
    
 
 0.468
VC_A0762
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.458
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.