STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0772Tyrosine-specific transport protein; Similar to GB:M23240 SP:P18199 PID:148089 GB:U00096 PID:1736569; identified by sequence similarity; putative. (400 aa)    
Predicted Functional Partners:
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.774
VC_A0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.568
menC
o-succinylbenzoate-CoA synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.554
VC_0415
Rod shape-determining protein MreB; Similar to SP:P13519 GB:M22055 PID:606191 PID:1128967 GB:U00096; identified by sequence similarity; putative.
      
 0.542
VC_A0788
DnaJ-related protein; Similar to SP:P48207 PID:893246; identified by sequence similarity; putative.
  
  
 0.522
dcuC
C4-dicarboxylate transporter, anaerobic; Responsible for the transport of C4-dicarboxylates during anaerobic growth; Belongs to the DcuC/DcuD transporter (TC 2.A.61) family.
  
   
 0.504
VC_A0773
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
       0.498
VC_A0747
Anaerobic glycerol-3-phosphate dehydrogenase, subunit A; Similar to GB:M20938 SP:P13032 PID:146177 GB:U00096 PID:1788574; identified by sequence similarity; putative.
  
  
 0.491
VC_1386
Heat shock protein 70 family protein; Similar to SP:P36928 GB:U00096 PID:1788384; identified by sequence similarity; putative.
  
 
  0.489
VC_1301
Serine transporter; Similar to SP:P36559 GB:U01233 PID:402256 PID:882691 GB:U00096; identified by sequence similarity; putative.
  
     0.486
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.