Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0781Conserved hypothetical protein; Identified by Glimmer2; putative. (815 aa)    
Predicted Functional Partners:
VC_A0783
Arylesterase; Similar to GB:X71116 SP:Q07792 PID:296403; identified by sequence similarity; putative.
 
 
   0.984
VC_A0782
ABC transporter, ATP-binding protein; Similar to SP:P31219 GB:U00096 PID:1773177 PID:1786703; identified by sequence similarity; putative.
 
 
 
 0.975
VC_1628
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.718
fabV2
Hypothetical protein; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.
       0.685
VC_A0779
Hypothetical protein; Identified by Glimmer2; putative.
       0.617
VC_A0785
GGDEF family protein; Similar to PID:1651932; identified by sequence similarity; putative.
       0.613
VC_A0786
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.580
VC_1630
ABC transporter, ATP-binding protein; Similar to GB:AE000782; identified by sequence similarity; putative.
  
  
 0.409
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.409
VC_2553
ABC transporter, ATP-binding protein, authentic frameshift; Identified by match to PFAM protein family HMM PF00005.
  
  
 0.409
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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