Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0782ABC transporter, ATP-binding protein; Similar to SP:P31219 GB:U00096 PID:1773177 PID:1786703; identified by sequence similarity; putative. (225 aa)    
Predicted Functional Partners:
VC_A0781
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.975
VC_A0783
Arylesterase; Similar to GB:X71116 SP:Q07792 PID:296403; identified by sequence similarity; putative.
 
 
   0.956
VC_1566
Conserved hypothetical protein; Identified by Glimmer2; putative.
     0.844
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
   0.832
fabV2
Hypothetical protein; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.
       0.685
VC_A0779
Hypothetical protein; Identified by Glimmer2; putative.
       0.617
VC_1567
Conserved hypothetical protein; Identified by Glimmer2; putative.
     0.614
VC_A0785
GGDEF family protein; Similar to PID:1651932; identified by sequence similarity; putative.
       0.613
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.590
VC_A0786
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.580
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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