Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_A0786Conserved hypothetical protein; Identified by Glimmer2; putative. (549 aa)    
Predicted Functional Partners:
VC_A0785
GGDEF family protein; Similar to PID:1651932; identified by sequence similarity; putative.
       0.726
fabV2
Hypothetical protein; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.
       0.636
VC_A0955
Transcriptional regulator, MarR family; Similar to GB:X74409 SP:P42195 PID:396458; identified by sequence similarity; putative.
      
 0.618
VC_A0783
Arylesterase; Similar to GB:X71116 SP:Q07792 PID:296403; identified by sequence similarity; putative.
       0.599
VC_A0781
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.580
VC_A0782
ABC transporter, ATP-binding protein; Similar to SP:P31219 GB:U00096 PID:1773177 PID:1786703; identified by sequence similarity; putative.
       0.580
VC_A0686
iron(III) ABC transporter, permease protein; Similar to PID:1469285 PID:1477454; identified by sequence similarity; putative.
      
 0.458
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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