STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0792Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative. (114 aa)    
Predicted Functional Partners:
VC_A0791
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.894
VC_1408
Transcriptional regulator, TetR family; Similar to GB:M97208 SP:P32398 PID:143046 PID:2226233 GB:AL009126; identified by sequence similarity; putative.
      
 0.573
VC_A0793
Hypothetical protein; Identified by Glimmer2; putative.
       0.553
VC_A0794
Hypothetical protein; Identified by Glimmer2; putative.
       0.553
VC_0257
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.552
VC_1478
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.552
VC_1789
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.552
VC_A0371
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.552
VC_A0508
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
 
  
 0.552
VC_A0767
Transcriptional regulator, TetR family; Similar to SP:P34000 GB:U00734 PID:532309 GB:U00096 PID:1773146; identified by sequence similarity; putative.
      
 0.542
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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