STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0809Conserved hypothetical protein; Identified by Glimmer2; putative. (516 aa)    
Predicted Functional Partners:
cry2
Deoxyribodipyrimidine photolyase, putative; Has no photolyase activity.
 
   
 0.845
cry1
Deoxyribodipyrimidine photolyase; May have a photoreceptor function. Binds DNA; probably functions as a transcriptional repressor (By similarity). Has no photolyase activity. Upon purification from either V.cholerae or E.coli an approximately 60 nucleotide RNA is associated with the protein.
 
   
 0.819
phrA
Deoxyribodipyrimidine photolyase; Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
 
   
 0.654
VC_1125
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.626
VC_1389
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.611
VC_1582
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0753 family.
  
     0.584
VC_1812
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.564
VC_1118
Transcriptional regulator, putative; Similar to PID:1653608; identified by sequence similarity; putative.
 
   
 0.550
VC_A0055
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.541
VC_1815
C-factor, putative; Similar to PID:1652815; identified by sequence similarity; putative.
 
   
 0.524
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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