Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_A0812Leucine aminopeptidase-related protein; Similar to PID:1694931; identified by sequence similarity; putative. (476 aa)    
Predicted Functional Partners:
VC_A0813
Aminopeptidase; Similar to PID:1694931; identified by sequence similarity; putative.
 
  
0.842
gbpA
Chitinase, putative; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. This function enhances bacterial colonization in the gastrointestinal tract and may also be important in the environment by augment colonization of chitinous structures, leading to improved survival. Promotes bacterial attachment to, and colonization of, zooplankton in the aquatic ecosystem; Belongs to the GbpA family.
 
  
 0.806
VC_1200
Trypsin, putative; Similar to SP:P51588; identified by sequence similarity; putative.
 
   
 0.798
VC_A0803
Serine protease, putative; Similar to PID:1336053; identified by sequence similarity; putative.
 
   
 0.767
VC_A0096
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.717
VC_1089
Periplasmic binding protein-related protein; Similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity; putative.
   
    0.679
VC_1644
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.677
vcc
Collagenase; Possesses gelatinolytic activity; Belongs to the peptidase M9A family.
  
     0.664
VC_1649
Trypsin, putative; Similar to SP:P26262 PID:200359; identified by sequence similarity; putative.
 
   
 0.629
VC_1952
Chitinase; Similar to GP:3851166; identified by sequence similarity; putative.
 
   
 0.572
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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