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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0813Aminopeptidase; Similar to PID:1694931; identified by sequence similarity; putative. (501 aa)    
Predicted Functional Partners:
VC_A0812
Leucine aminopeptidase-related protein; Similar to PID:1694931; identified by sequence similarity; putative.
 
  
0.825
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.729
pepA
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides (By similarity).
     
 0.707
VC_1330
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.664
VC_0157
Alkaline serine protease; Similar to GB:M25499 SP:P16588 PID:155251; identified by sequence similarity; putative; Belongs to the peptidase S8 family.
  
  
0.660
gbpA
Chitinase, putative; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. This function enhances bacterial colonization in the gastrointestinal tract and may also be important in the environment by augment colonization of chitinous structures, leading to improved survival. Promotes bacterial attachment to, and colonization of, zooplankton in the aquatic ecosystem; Belongs to the GbpA family.
 
  
 0.649
VC_0078
Ferritin; Iron-storage protein.
    
 0.644
VC_1494
Aminopeptidase N; Similar to GB:M15273 SP:P04825 GB:M15676 GB:X04020 PID:147142; identified by sequence similarity; putative.
   
 0.619
VC_1644
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.616
VC_1596
Galactose-1-phosphate uridylyltransferase; Similar to SP:P09148 GB:X06226 PID:41524 PID:41531 GB:U00096; identified by sequence similarity; putative.
   
 
  0.608
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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