Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_A0837Hemolysin, putative; Similar to GB:U14003 SP:P39319 PID:537059 GB:U00096 PID:1790664; identified by sequence similarity; putative. (437 aa)    
Predicted Functional Partners:
VC_0589
ABC transporter, ATP-binding protein; Similar to GB:D26562 SP:P36879 PID:473794 GB:U00096 PID:1786319; identified by sequence similarity; putative.
  
 
 0.511
VC_A0836
Hexapeptide-repeat containing-acetyltransferase; Similar to GB:D26185 SP:P37515 GB:L16865 PID:438465 PID:467369; identified by sequence similarity; putative.
       0.508
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.493
VC_A0838
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.484
VC_A0732
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.480
VC_A0835
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.465
VC_1637
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.459
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.404
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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