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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0851Conserved hypothetical protein; Identified by Glimmer2; putative. (359 aa)    
Predicted Functional Partners:
VC_A0850
Response regulator; Similar to GB:M23230 SP:P26275 PID:151004 PID:1196739; identified by sequence similarity; putative.
 
 
 0.982
VC_0693
Response regulator; Similar to SP:P33356 PID:405856 GB:U00096 PID:2367130; identified by sequence similarity; putative.
 
 
 0.959
VC_1325
Galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein; Similar to SP:P23905 GB:X52093; identified by sequence similarity; putative.
   
 
 0.814
VC_A0130
Ribose ABC transporter, periplasmic D-ribose-binding protein; Similar to GB:L42023 SP:P44737 PID:1003892 PID:1222436 PID:1204755; identified by sequence similarity; putative.
   
 
 0.814
VC_A0710
Periplasmic protein TorT; Similar to GB:X78195 SP:P38683 PID:1122857 GB:U00096 PID:1787228; identified by sequence similarity; putative.
   
 
 0.814
luxP
luxP protein; Binds to the signaling molecule autoinducer 2 (AI-2), a furanosyl borate diester, (3a-methyl-5,6-dihydrofuro- [2,3d][1,3,2]dioxaborole-2,2,6,6a-tetraol). This complex then interacts with the LuxQ sensor protein (By similarity).
   
 
 0.814
VC_0608
iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.
   
   0.808
VC_A0603
ABC transporter, periplasmic substrate-binding protein; Similar to GB:L42023 SP:P43950 SP:P43951 PID:1003162 PID:1003164; identified by sequence similarity; putative.
   
   0.808
VC_A0685
iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to GB:L42023 SP:P43950 SP:P43951 PID:1003162 PID:1003164; identified by sequence similarity; putative.
   
   0.808
VC_A0706
Phosphoglycerate transport regulatory protein PgtC, putative; Similar to GB:M21279 SP:P37591 GB:X52093 PID:154258; identified by sequence similarity; putative.
   
   0.808
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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