Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0856Hypothetical protein; Identified by Glimmer2; putative. (223 aa)    
Predicted Functional Partners:
VC_A0852
Hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_A0853
Hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_A0854
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_A0851
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.806
VC_A0855
ABC transporter, ATP-binding protein; Similar to GB:AE000782; identified by sequence similarity; putative.
       0.773
VC_A0857
Hypothetical protein; Identified by Glimmer2; putative.
       0.566
VC_A0858
Hypothetical protein; Identified by Glimmer2; putative.
       0.566
VC_A0850
Response regulator; Similar to GB:M23230 SP:P26275 PID:151004 PID:1196739; identified by sequence similarity; putative.
       0.499
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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