STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0871Transcriptional regulator, GntR family; Similar to GB:U00096 PID:1742348 PID:1742355 PID:1787710; identified by sequence similarity; putative. (473 aa)    
Predicted Functional Partners:
napF
Iron-sulfur cluster-binding protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
    
   0.649
VC_2093
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.579
VC_A0873
Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative.
     
 0.514
VC_A0872
Cytochrome d ubiquinol oxidase, subunit I; Similar to GB:J03939 SP:P11026 PID:497637 GB:U00096 PID:1651327; identified by sequence similarity; putative.
       0.500
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
       0.487
VC_A0870
D-alanyl-D-alanine endopeptidase; Similar to SP:P72161 PID:1518782; identified by sequence similarity; putative; Belongs to the peptidase S11 family.
       0.428
VC_1712
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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