STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0876D-serine deaminase activator; Similar to SP:P46068 PID:1050466 GB:U00096 PID:1788706 PID:1799763; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
VC_1588
Transcriptional regulator, LysR family; Similar to PID:727227 SP:P52666; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.730
VC_A0833
Transcriptional regulator, LysR family; Similar to GB:AE000657; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.636
VC_2103
Transcriptional regulator, LysR family; Similar to GB:X73124 SP:P39592 PID:413948 GB:AL009126; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.631
VC_A0756
Transcriptional regulator, LysR family; Similar to GB:X73124 SP:P39647 PID:580884 GB:AL009126; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.612
dsdA
D-serine dehydratase; Similar to GB:J01603 SP:P00926 GB:X86379 PID:145806 GB:U00096; identified by sequence similarity; putative; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
 
     0.608
VC_0732
Transcriptional regulator, LysR family; Similar to PID:887385 SP:P52667 PID:1359475; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.604
VC_2485
Transcriptional regulator, LysR family; Similar to GB:D10483 SP:P10151 GB:M21150 PID:1128961 PID:146605; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.540
VC_A0542
Transcriptional regulator, LysR family; Similar to SP:P32484 PID:405876 PID:466777 GB:U00096 PID:1788481; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.518
VC_1580
Transcriptional regulator, LysR family; Similar to GB:X66866 PID:403331 SP:P52692; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.442
VC_A0877
Hydrolase, putative; Similar to PID:882252 SP:P54965; identified by sequence similarity; putative.
       0.406
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.