STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0889Transcriptional regulator, LysR family; Similar to PID:924993 SP:P52689; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
VC_A0890
Glyoxylase I family protein; Similar to GB:U00096 PID:1552764 PID:1786385 PID:971393; identified by sequence similarity; putative.
       0.799
VC_1588
Transcriptional regulator, LysR family; Similar to PID:727227 SP:P52666; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.750
VC_2636
Transcriptional regulator, LysR family; Similar to PID:1658188; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.712
VC_A0833
Transcriptional regulator, LysR family; Similar to GB:AE000657; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.673
VC_1561
Transcriptional regulator, LysR family; Similar to SP:P10183 PID:150233; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.603
VC_2760
Transcriptional regulator, LysR family; Similar to SP:P37598 GB:U00096 PID:1742732 PID:1742742 PID:1787949; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.596
VC_0732
Transcriptional regulator, LysR family; Similar to PID:887385 SP:P52667 PID:1359475; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.588
VC_A0888
Transcriptional regulator, LuxR family; Similar to GB:M98835 SP:Q03316 PID:152430; identified by sequence similarity; putative.
       0.526
VC_1706
Transcriptional activator MetR; Similar to GB:M17356 SP:P05984 PID:154177; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.522
VC_2485
Transcriptional regulator, LysR family; Similar to GB:D10483 SP:P10151 GB:M21150 PID:1128961 PID:146605; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
   
 0.521
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.