Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0891Conserved hypothetical protein; Identified by Glimmer2; putative. (470 aa)    
Predicted Functional Partners:
VC_A0892
Hypothetical protein; Identified by Glimmer2; putative.
       0.733
VC_A0037
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.535
VC_1265
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.478
VC_A0065
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.474
VC_A0064
TonB system receptor, putative; Similar to GB:L27149 PID:529727; identified by sequence similarity; putative.
 
   
 0.462
VC_A0893
Hypothetical protein; Identified by Glimmer2; putative.
       0.461
VC_1091
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Similar to SP:P06202 GB:X05491 GB:X52093 PID:47802 PID:47808; identified by sequence similarity; putative.
  
    0.435
VC_A0591
Peptide ABC transporter, periplasmic peptide-binding protein, putative; Similar to SP:P33913 GB:U00008 PID:453986 GB:U00096 PID:1788503; identified by sequence similarity; putative.
  
    0.435
VC_0200
iron(III) compound receptor; Similar to GB:D26562 SP:P06971 GB:M12486 PID:145949 PID:473809; identified by sequence similarity; putative.
 
  
 0.430
VC_A0894
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.420
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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