Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
VC_A0903Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the glycerate kinase type-1 family. (377 aa)    
Predicted Functional Partners:
VC_2504
2-hydroxyacid dehydrogenase family protein; Similar to GB:L42023 SP:P45250 PID:1007767 PID:1221703 PID:1205791; identified by sequence similarity; putative; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.928
VC_A0904
Permease; Similar to GB:J01603 SP:P08555 GB:X86379 PID:145805 PID:784980; identified by sequence similarity; putative.
 
  
 0.917
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.912
VC_A0905
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.854
tadA
yfhC protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.691
VC_0286
Gluconate permease, putative; Similar to PID:882633 GB:U00096 PID:1789097; identified by sequence similarity; putative.
 
  
 0.674
VC_2555
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.658
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
    0.615
VC_A0902
Hypothetical protein; Identified by Glimmer2; putative.
       0.496
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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