Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_A0904Permease; Similar to GB:J01603 SP:P08555 GB:X86379 PID:145805 PID:784980; identified by sequence similarity; putative. (450 aa)    
Predicted Functional Partners:
VC_A0903
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the glycerate kinase type-1 family.
 
  
 0.917
VC_0287
Thermoresistant gluconokinase; Similar to SP:P46859 PID:606372 GB:U00096 PID:1304070 PID:1789845; identified by sequence similarity; putative.
 
  
 0.656
VC_A0905
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.620
VC_0420
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.598
VC_1936
Phosphatidate cytidylyltransferase, putative; Similar to GB:U00096 PID:1742297 PID:1742302 PID:1787677; identified by sequence similarity; putative; Belongs to the CDS family.
      
 0.598
VC_A0902
Hypothetical protein; Identified by Glimmer2; putative.
       0.463
VC_A0987
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
   
    0.403
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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