Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0921Hypothetical protein; Identified by Glimmer2; putative. (372 aa)    
Predicted Functional Partners:
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
     0.594
VC_A0922
Hypothetical protein; Identified by Glimmer2; putative.
       0.515
VC_1246
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.498
VC_1884
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.489
VC_2395
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.487
VC_0070
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
VC_2500
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
  
 0.476
VC_1487
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.462
VC_0303
Sensor histidine kinase; Similar to GP:2808665; identified by sequence similarity; putative.
 
  
 0.411
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.