STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0964Glycine cleavage operon activator, putative; Similar to GB:L42023 SP:P45099 PID:1007064 PID:1221317 PID:1205437; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
VC_1955
Transcriptional regulator, LysR family; Similar to PID:1652912; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.764
VC_A0833
Transcriptional regulator, LysR family; Similar to GB:AE000657; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.750
irgB
Iron-regulated virulence regulatory protein IrgB; Transcription activation of the irgA gene. In the presence of sufficient iron, transcription of both irgA and irgB is negatively regulated by a fur-like protein. In low iron conditions, negative regulation of transcription is removed, and production of irgB leads to positive transcriptional activation of irgA (By similarity).
  
     0.748
VC_A0991
Transcriptional regulator, LysR family; Similar to PID:1652912; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.746
VC_A0982
Transcriptional regulator, LysR family; Similar to PID:1652750; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.734
VC_2636
Transcriptional regulator, LysR family; Similar to PID:1658188; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.719
VC_0732
Transcriptional regulator, LysR family; Similar to PID:887385 SP:P52667 PID:1359475; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.674
VC_A0756
Transcriptional regulator, LysR family; Similar to GB:X73124 SP:P39647 PID:580884 GB:AL009126; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.656
VC_A0963
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.652
VC_0161
Transcriptional activator IlvY; Similar to GB:L42023 SP:P44821 PID:1005575 PID:1220765 PID:1204932; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.629
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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